PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04686.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 412aa    MW: 45140.2 Da    PI: 11.5998
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04686.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.61.5e-08227288166
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                                   +Wt +e+laL +a++ +  +++r+ l  ++W++v+++      ++++ qC++k e+l++r +  ++
  Zmw_sc04686.1.g00020.1.am.mk 227 CWTPDETLALARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 288
                                   8*********************************99865....689*************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-7226288No hitNo description
PROSITE profilePS500906.307228280IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-4228279IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
LARSGRDTPP LRPAFNAAER AQPALLSVLS TVQAKASPPP DVLPTAPRGR PDLASALCPA  60
DALARYISRV GVGAPSSLHG TNTPPPTTRA AVPRPQATSY TGSRVPPIAA SRNSHDVTTA  120
EGGYGNEKYC RKEKRCGHGA RRLSTARSPS DGQQRAEKED ENHRKSLRVP RLAPRGCRSR  180
ERFRYNPQQH AVLRHRLTTT TTTTTTMASS YASPRANGSG RRVPPPCWTP DETLALARAY  240
TARRLAVGRE HLTSADWAAV AAAAPSKTAR QCRHKVEKLR RRLRSSRRRP CPLLDAIDLL  300
DGPSPPIMSR VKSPSPSRSP SPPPAVSLPS PYSSPASPPR KRRRDDYGDE YGVSDLVGAL  360
RVIGEGFLRA EERRMEAARE TQRMRMDMAL RHLDAQRRLM EVFVGRIVDA LD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283KLRRRLR
2278284LRRRLRS
3339343RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144478.13e-82uncharacterized protein LOC100277445
TrEMBLB6TUK07e-81B6TUK0_MAIZE; FRIGIDA interacting protein 2
STRINGGRMZM2G320827_P011e-81(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024