PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04699.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 238aa    MW: 24992.2 Da    PI: 4.141
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04699.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.34.1e-24189238151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ
  Zmw_sc04699.1.g00010.1.sm.mk 189 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQ 238
                                   6799*****************.****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.119186238IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-23187238IPR009057Homeodomain-like
SuperFamilySSF466893.58E-15187238IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-23189238IPR006447Myb domain, plants
PfamPF002491.5E-6192238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLTVSPARCT GLEERAAAGG HASIGDVGME TEAIGAVSDL DFDFSVDDID FGDFFLRLED  60
DGDALPDLEV DPADIFTDFE EIAGGGNGVV EDQEVPTVHH PSPEVAHVDP CSGAGLAEEN  120
STAIADAEEG KGECNQHADE LVAAANNGDF AGSGTAAVAE EKSTSSTSSQ EAESRGHKSS  180
GKNSHGKKKA KVDWTPELHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-16186238254ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812542.15e-86probable transcription factor GLK1
SwissprotQ5Z5I44e-71GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A1E5VSE82e-90A0A1E5VSE8_9POAL; Putative transcription factor GLK1
STRINGPavir.J11422.1.p4e-82(Panicum virgatum)
STRINGGRMZM2G026833_P012e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]