PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04701.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 632aa MW: 69430.3 Da PI: 7.6929

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04701.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.6e-13	321	368	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+L+ Zmw_sc04701.1.g00050.1.am.mk 321 KNHVMSERRRREKLNEMFLILKSLVPTiH------KVDKASILAETIAYLKQLE 368 5899*********************66......***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.8E-16	51	135	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.897	318	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-15	321	372	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.7E-17	322	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-11	322	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-17	322	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-16	324	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048629	Biological Process	trichome patterning
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
MALLASSRRP QEERPQPPGK QQLRNQLAAA ARSVNWSYAL FWSISSTHPG SEQLRELYET 60 LLSGGRDHRA ARPVAALSPE DLGDTEWYYV VCMTYAFRPG QGLPGRSFTC NEHVWLCNAH 120 LADSKTFPRA LLAKVREDPD WVRLVTESFW ERQLPACTEE PCSRPPANGT GDADITTVFE 180 DLDHNAMETM ITSRGQEFGA VGILSSASLE HAANEIDELY SLCDELGVDD WIVEGPFEVP 240 CSPKAVAPGP GDTDDAGNVA MPVDRMTSFM AWRGPDSSGA AVPVIGEPQK LLKKVVAGGA 300 WENSSGAGGN STRSTQECGI KNHVMSERRR REKLNEMFLI LKSLVPTIHK VDKASILAET 360 IAYLKQLERR VEELESTDKD EHMTQPSETR PSGRHSNGGV EKRVSGSKRK KASKLSDDTE 420 REHHWVRSKD GTSNVTVTVT DKDVLLEVHC QWEELLVTRV FDAMKTLHLD VLSVQASTQD 480 GFMGLKIRAQ RNGPAKPEGA KQRSPCGDSR DIFAARDDVS FFIQRKAKRY FTAARLSSTF 540 LLPCFPVYPQ FARTRLGSSS APRRSTCGRR PCSLGLIARP LRPVFDTSAA TGAAAASAGS 600 QPVSGFRSGR AGRHLVARIL DAPLAVERSS ES

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

MALLASSRRP QEERPQPPGK QQLRNQLAAA ARSVNWSYAL FWSISSTHPG SEQLRELYET  60
LLSGGRDHRA ARPVAALSPE DLGDTEWYYV VCMTYAFRPG QGLPGRSFTC NEHVWLCNAH  120
LADSKTFPRA LLAKVREDPD WVRLVTESFW ERQLPACTEE PCSRPPANGT GDADITTVFE  180
DLDHNAMETM ITSRGQEFGA VGILSSASLE HAANEIDELY SLCDELGVDD WIVEGPFEVP  240
CSPKAVAPGP GDTDDAGNVA MPVDRMTSFM AWRGPDSSGA AVPVIGEPQK LLKKVVAGGA  300
WENSSGAGGN STRSTQECGI KNHVMSERRR REKLNEMFLI LKSLVPTIHK VDKASILAET  360
IAYLKQLERR VEELESTDKD EHMTQPSETR PSGRHSNGGV EKRVSGSKRK KASKLSDDTE  420
REHHWVRSKD GTSNVTVTVT DKDVLLEVHC QWEELLVTRV FDAMKTLHLD VLSVQASTQD  480
GFMGLKIRAQ RNGPAKPEGA KQRSPCGDSR DIFAARDDVS FFIQRKAKRY FTAARLSSTF  540
LLPCFPVYPQ FARTRLGSSS APRRSTCGRR PCSLGLIARP LRPVFDTSAA TGAAAASAGS  600
QPVSGFRSGR AGRHLVARIL DAPLAVERSS ES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	331	ERRRRE
2	327	332	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823473.1	0.0	anthocyanin regulatory R-S protein-like isoform X1
Refseq	XP_025823474.1	0.0	anthocyanin regulatory R-S protein-like isoform X1
Refseq	XP_025823475.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13526	1e-164	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A2T7CYI5	0.0	A0A2T7CYI5_9POAL; Uncharacterized protein
STRING	Si000845m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]