PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04755.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 624aa MW: 67481.2 Da PI: 8.0143

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04755.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27	7.8e-09	562	599	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe+ +yp+ +e+e LA++ gL+ +qV++WF N R + Zmw_sc04755.1.g00060.1.am.mk 562 FENflRPYPKDSEKEMLAARSGLSRSQVSNWFINARVR 599 7766689*****************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	8.3E-9	372	492	IPR006563	POX domain
PROSITE profile	PS50071	11.985	540	603	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-25	542	614	IPR009057	Homeodomain-like
SMART	SM00389	8.9E-8	543	607	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-15	543	611	IPR009057	Homeodomain-like
CDD	cd00086	4.87E-12	543	604	No hit	No description
Pfam	PF05920	1.0E-15	560	599	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MGRFSSYPKH IGVLYIYGSR REAIGVWAMK QKGRDRSSNL LSGGACPADG AQPASSSCSQ 60 PATRFQIFWL PGSFFTERAG RHADGCEFCE RHLQLALLSC SQLGPIFSCW FAKQSPTNLS 120 LLVVRIRGGQ LLSNLASPLS FLEVVVVGVS IGSFDTFIPT SLKMMGNASC QQLGVDAMMS 180 NSCFDSNMVG ADVATMVHVP EYMAHDGSLG LGGDFLADGG AVLAGQLQLV RPVAPQSLSP 240 QEAHGAYSVA SGYGPSPSDV TAALPPTAAK LAGEPESSWL QEQYHGPTWF SGDGFRDPFT 300 AAARELSLRL AAESSSTGTV VNLPDQSSDV SCSGLTHAGS SASHGLFQPP YCGGGDDQLG 360 RARRGRPHFS HVLSRSGYAH IVQQTLDEFV GCLLQDVAGA TGSVVGEAHC PLPSSSSSIT 420 TPSNQFMFAG AEEHPHHRLR NDLLKLLQLC LDEMQSAASR YGSMVRPGGG ALSAPFSYTA 480 VSATHRRLRA RIIAEIASVT QTQRGREQTS SGSLADRERS WESAFIQKHW ALRQLRRGDQ 540 QSWRPQRGLP EKSVAVLKAW MFENFLRPYP KDSEKEMLAA RSGLSRSQVS NWFINARVRL 600 WKPMIEEMYE DLKKVSADRE GAPF

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MGRFSSYPKH IGVLYIYGSR REAIGVWAMK QKGRDRSSNL LSGGACPADG AQPASSSCSQ  60
PATRFQIFWL PGSFFTERAG RHADGCEFCE RHLQLALLSC SQLGPIFSCW FAKQSPTNLS  120
LLVVRIRGGQ LLSNLASPLS FLEVVVVGVS IGSFDTFIPT SLKMMGNASC QQLGVDAMMS  180
NSCFDSNMVG ADVATMVHVP EYMAHDGSLG LGGDFLADGG AVLAGQLQLV RPVAPQSLSP  240
QEAHGAYSVA SGYGPSPSDV TAALPPTAAK LAGEPESSWL QEQYHGPTWF SGDGFRDPFT  300
AAARELSLRL AAESSSTGTV VNLPDQSSDV SCSGLTHAGS SASHGLFQPP YCGGGDDQLG  360
RARRGRPHFS HVLSRSGYAH IVQQTLDEFV GCLLQDVAGA TGSVVGEAHC PLPSSSSSIT  420
TPSNQFMFAG AEEHPHHRLR NDLLKLLQLC LDEMQSAASR YGSMVRPGGG ALSAPFSYTA  480
VSATHRRLRA RIIAEIASVT QTQRGREQTS SGSLADRERS WESAFIQKHW ALRQLRRGDQ  540
QSWRPQRGLP EKSVAVLKAW MFENFLRPYP KDSEKEMLAA RSGLSRSQVS NWFINARVRL  600
WKPMIEEMYE DLKKVSADRE GAPF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813413.1	0.0	homeobox protein ATH1-like
TrEMBL	A0A3L6S1C5	0.0	A0A3L6S1C5_PANMI; Homeobox protein ATH1-like
STRING	Pavir.Db01271.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3143	33	65