PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04756.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 233aa MW: 24940.4 Da PI: 8.8737

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04756.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ L H+++H Zmw_sc04756.1.g00020.1.am.mk 104 YTCGYCKREFRSAQALGGHMNVH 126 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.85E-6	103	131	No hit	No description
Pfam	PF13912	1.6E-6	104	127	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.094	104	131	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MLVNVSSPLC DLLGSGSFGR LKGVLSRRKA PARLGKTCHV VFPGTASDKV DYSHNTLPAM 60 ERDHGRGLKH QHQQQQVAWT PGHNFGLSGC FSWPAVPQPL SSSYTCGYCK REFRSAQALG 120 GHMNVHRRDR ARLRQCCPAY APSPNLIAAH HRRAAAAGPP LPNLNFVPPQ CAGATTAEPV 180 VYSFFSTTTT SAMKAAVQVN LELGISGGFC GHDGAVPEEG GLDLELRLGC PLE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975075.2	5e-54	transcriptional regulator SUPERMAN
TrEMBL	A0A1E5W4I1	6e-61	A0A1E5W4I1_9POAL; Uncharacterized protein
STRING	Pavir.J31403.1.p	2e-54	(Panicum virgatum)
STRING	Si011797m	2e-54	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65