PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04760.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 351aa MW: 38694.4 Da PI: 9.7471

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04760.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.3e-17	252	299	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zmw_sc04760.1.g00060.1.am.mk 252 KGPWTSEEDIILVSYVQEHGPGNWRSVPISTGLMRCSKSCRLRWTNYL 299 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.385	247	303	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	250	298	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-12	251	301	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-15	252	299	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.04E-19	253	323	IPR009057	Homeodomain-like
CDD	cd00167	9.05E-11	254	299	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.7E-5	299	322	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MLVAEATDGE PEARAALPSC ARVPVAQRCA VPCRSYAGVG QEPRAVSAVV RPVRNSPLPV 60 ASRVSDSGVS ELCGVAVSVR RAPSNQTRHI DVLLQQGDGM PSPPERYIWW HLYSPTEARG 120 HYRPITLHQL AGRVTGVANS PIEGNNMTVP AAVADATDNK QPPSIIVIQS AAAEKSMIGW 180 LLSSSWQMRF LPDGGGLSCT LHCRRQQGPE ISSILTTIDV DNRQQLAQPS CGRPSPEKMG 240 RPPCCDMVGI KKGPWTSEED IILVSYVQEH GPGNWRSVPI STGLMRCSKS CRLRWTNYLR 300 PGIRRGNFTP HEEGIIVHLH VRARPVNQHK THAKMVKNTE MFWCRKTLRR F

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MLVAEATDGE PEARAALPSC ARVPVAQRCA VPCRSYAGVG QEPRAVSAVV RPVRNSPLPV  60
ASRVSDSGVS ELCGVAVSVR RAPSNQTRHI DVLLQQGDGM PSPPERYIWW HLYSPTEARG  120
HYRPITLHQL AGRVTGVANS PIEGNNMTVP AAVADATDNK QPPSIIVIQS AAAEKSMIGW  180
LLSSSWQMRF LPDGGGLSCT LHCRRQQGPE ISSILTTIDV DNRQQLAQPS CGRPSPEKMG  240
RPPCCDMVGI KKGPWTSEED IILVSYVQEH GPGNWRSVPI STGLMRCSKS CRLRWTNYLR  300
PGIRRGNFTP HEEGIIVHLH VRARPVNQHK THAKMVKNTE MFWCRKTLRR F

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP66120	2	2