PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04770.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 205aa    MW: 21543.1 Da    PI: 8.0721
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04770.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.71.3e-5620115297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   r qdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekr+t+ngddllwa++tlGf+dyv+p
  Zmw_sc04770.1.g00050.1.sm.mk  20 RGQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRRTVNGDDLLWAMTTLGFKDYVDP 100
                                   679****************************************************************************** PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk+yl+++releg+k
  Zmw_sc04770.1.g00050.1.sm.mk 101 LKLYLHRFRELEGDK 115
                                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-5117130IPR009072Histone-fold
SuperFamilySSF471131.55E-3822124IPR009072Histone-fold
PfamPF008082.6E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-175371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-177290No hitNo description
PRINTSPR006151.6E-1791109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MPDSDNESGG PSTADLSSAR GQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRRTV NGDDLLWAMT TLGFKDYVDP LKLYLHRFRE LEGDKVASSG  120
SGSGSGPLQS KADTPSSAHN GAGSAVGYGM YCGGSGVMMM VGQPMYGSPP AGYPQPPHHQ  180
VVMGAKGAYG HGGASPSGLG RQDRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-4818110597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958263.12e-91nuclear transcription factor Y subunit B-10
SwissprotQ69J401e-73NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBLA0A3L6QSG34e-92A0A3L6QSG3_PANMI; Nuclear transcription factor Y subunit B-3-like
STRINGSi031069m1e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]