PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04777.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 89aa MW: 10146.7 Da PI: 9.364

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04777.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.1e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l d + ++G g+W++ +++ g++R +k+c++rw +yl Zmw_sc04777.1.g00030.1.sm.mkhc 15 KGLWSPEEDEKLRDFILRHGHGCWSALPAKAGLNRNGKSCRLRWINYL 62 678*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.003	10	66	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-23	10	65	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-12	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-15	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.04E-21	17	89	IPR009057	Homeodomain-like
CDD	cd00167	4.65E-10	18	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-8	66	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MGCKACEKPK PNYRKGLWSP EEDEKLRDFI LRHGHGCWSA LPAKAGLNRN GKSCRLRWIN 60 YLRPGLKHGE FSPEEEETVM SLHAALGNK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015689021.1	1e-56	PREDICTED: myb-related protein 308
Swissprot	Q9M0K4	5e-37	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A287UCU7	8e-56	A0A287UCU7_HORVV; Uncharacterized protein
TrEMBL	A0A453P5W5	5e-56	A0A453P5W5_AEGTS; Uncharacterized protein
TrEMBL	I1P2I3	5e-56	I1P2I3_ORYGL; Uncharacterized protein
TrEMBL	J3LF78	3e-55	J3LF78_ORYBR; Uncharacterized protein
STRING	OB02G32950.1	4e-56	(Oryza brachyantha)
STRING	ORGLA02G0218900.1	8e-57	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1707	37	109

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]