PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04781.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 275aa MW: 29952.1 Da PI: 6.7262

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04781.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	151	195	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L Zmw_sc04781.1.g00010.1.sm.mk 151 HSIAERLRRERIAERIRLLQELVPNT-----NKTDRAAMLDEILDYVKFL 195 99*********************7.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-14	144	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.402	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-13	148	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-6	151	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAGQQPPGGP EDDFLDHLFA FPSAGAGGGA PGHHPFPLGL SLDAAAAKPV SFLPEMVRVR 60 ACLRRLTPDA SLTEGVGVLL QDRDPVQLAG LFPPAFTGAG GMQPMSLRPA PPHQVFHAPP 120 KPGEGAVAQQ PQTPAPRPKV RARRGQATDP HSIAERLRRE RIAERIRLLQ ELVPNTNKTD 180 RAAMLDEILD YVKFLRLQVK DEESDGGSTQ HIWEKWSTDG TEKEVAKLME EDIGAMQFLR 240 SKALCMIPIS LAMATYDRQH PQEGNSFKPE PNTSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804227.1	1e-112	transcription factor UNE12
Swissprot	O22768	1e-49	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A2S3GW17	1e-111	A0A2S3GW17_9POAL; Uncharacterized protein
STRING	Pavir.J03221.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]