PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04793.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 311aa MW: 34193.4 Da PI: 10.2773

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04793.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.2	2.2e-13	18	104	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrt 72 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ ++ Zmw_sc04793.1.g00080.1.sm.mkhc 18 CWSEGETAALVDAWGSRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS-- 94 7*****************************************999999*******************999886.. PP trihelix 73 sessstcpyfdqle 86 s ++++ ql+ Zmw_sc04793.1.g00080.1.sm.mkhc 95 ----SPWAFYGQLD 104 ....4688888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-23	16	104	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLELNR GSLRQPQWRE VADAVNSRPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGSSPWAFY GQLDLLVGPT LSASGAAAGK 120 RPSPPRAVPM LRRRQSPSRS PSPPMALPLP NYGRGSNLPS AVLHNAAAAA AAAAAESDSY 180 DGYNNNNDYD DDAASQQSPS RSVSKRKASG SGGFGELARA IETFAEMYER MESAKQRHAE 240 EMERQRIKFL KDLELKRMQA FVDMQLQLAR AKHARKGDTS SEMLISVLRI ISNNLQPSSH 300 GSANFAPNEM Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458303.1	1e-140	trihelix transcription factor ASIL2
TrEMBL	C5XG36	1e-139	C5XG36_SORBI; Uncharacterized protein
STRING	Sb03g030880.1	1e-140	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79