PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04801.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 252aa    MW: 27657.6 Da    PI: 7.3427
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04801.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.39.9e-33291212103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k+y++++d++++ ++ w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+
  Zmw_sc04801.1.g00040.1.am.mk  29 FVAKTYHMVSDPATDAVVCWGVANNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDADR---------WEFA 100
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+sF +g+++ll  i rk+++
  Zmw_sc04801.1.g00040.1.am.mk 101 HESFLRGQTQLLPLIVRKRKK 121
                                   ****************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3521112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-4925118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-3126118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-172952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2829118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-178092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGSECYVQLQ AMQQQPPPPQ AGAGAIAPFV AKTYHMVSDP ATDAVVCWGV ANNTFLVLDP  60
AAFSDYLLPS YFKHRNFASF VRQLNTYGFR KVDADRWEFA HESFLRGQTQ LLPLIVRKRK  120
KPGCRELCEE GEEVRGTIKA VQRLREEQRG MEEELQAMDR RLQAAESRPG QMMTFLAKLA  180
DEPGAVLRAM LAKKEELAEA GGKGSTAPLE APGKRRRIGG GEDCGAVAGG DAAEQGMGAV  240
QFPFSVLGQV FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-281811818129Heat shock factor protein 1
5d5v_B2e-281811818129Heat shock factor protein 1
5d5v_D2e-281811818129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRKK
2213217KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.11e-130heat stress transcription factor C-1b
SwissprotQ942D61e-131HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0E0N2341e-129A0A0E0N234_ORYRU; Uncharacterized protein
STRINGORUFI01G33030.11e-130(Oryza rufipogon)
STRINGOS01T0733200-011e-130(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]