PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04810.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 166aa    MW: 18277.3 Da    PI: 4.8421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04810.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY301e-092402458
                                  EEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
                          WRKY 24 YYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58
                                  YYrCt++   +Cp++k+ve++ ++dp ++ ++Y++eH++
  Zmw_sc04810.1.g00010.1.sm.mk  2 YYRCTYHqdhSCPATKHVEQTnSQDPPLFRVIYTNEHTC 40
                                  ******98999*******975268*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-8240IPR003657WRKY domain
SuperFamilySSF1182907.72E-8240IPR003657WRKY domain
PfamPF031067.4E-11240IPR003657WRKY domain
SMARTSM007743.7E-7242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
FYYRCTYHQD HSCPATKHVE QTNSQDPPLF RVIYTNEHTC ICGDPSSIHI QQMADASLRK  60
AEIELFPSLA PCNAGHEMIK EEEGAIVSSL LGVINGGDDV ATSESLRRDM QENTAALSSS  120
KYSNLSSKVD TRSSHEANPS ISPVLLPASE EPRMNLVEPL ESHCCN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972233.17e-58probable WRKY transcription factor 29
TrEMBLA0A1E5V3T96e-53A0A1E5V3T9_9POAL; Uncharacterized protein
TrEMBLK3XS922e-56K3XS92_SETIT; Uncharacterized protein
STRINGSi004791m3e-57(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139