PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04848.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 259aa    MW: 27256.9 Da    PI: 9.2356
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04848.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1972126256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++k+q ++Le++F+ +++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Zmw_sc04848.1.g00030.1.sm.mk  72 RKKLRLSKDQANVLEQCFKTHHTLTPKQKVALATSLDLRPRQVEVWFQNRRARTK 126
                                   788899***********************************************98 PP
2HD-ZIP_I/II122.71.8e-3972161191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlsk+q+++LE++F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL 
  Zmw_sc04848.1.g00030.1.sm.mk  72 RKKLRLSKDQANVLEQCFKTHHTLTPKQKVALATSLDLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCEQLAEENRRLG 152
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   kev+eLr +l
  Zmw_sc04848.1.g00030.1.sm.mk 153 KEVAELR-AL 161
                                   ******9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-1944129IPR009057Homeodomain-like
SuperFamilySSF466893.34E-1864129IPR009057Homeodomain-like
PROSITE profilePS5007116.3968128IPR001356Homeobox domain
SMARTSM003891.2E-1570132IPR001356Homeobox domain
CDDcd000861.75E-1572129No hitNo description
PfamPF000464.3E-1672126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
SMARTSM003401.3E-19128171IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-10128161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLNAVAVP DPWEVSPAAA EESRRRCSPA GSPPASSCSG KRAAERSGAG  60
SGDEDDDGGA ARKKLRLSKD QANVLEQCFK THHTLTPKQK VALATSLDLR PRQVEVWFQN  120
RRARTKLKQT EVDCEHLKRW CEQLAEENRR LGKEVAELRA LNAASSPAPP LTTLSMCLCC  180
RRVASLTTSS PSNATSNSAL AAHQHVHAAP NVAGVAPPPP AAAAAALPGR FFCGFMEAGS  240
APYGYGASSG LAKVVKAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.11e-91homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9312e-59HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE52e-59HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A2S3HLY52e-90A0A2S3HLY5_9POAL; Uncharacterized protein
STRINGPavir.Da02255.1.p7e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]