PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04863.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 225aa MW: 25412.3 Da PI: 6.1751

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04863.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.3	4.1e-11	61	115	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+ +++e+A++l +++e++ NrRa+ k+ Zmw_sc04863.1.g00010.1.sm.mkhc 61 RQRWQPTPMQLQVLENIFDQgNGTPSKPKIKEIAAELshhgQISETN------NRRARSKR 115 89***************99**************9999999996......88888876 PP
2	Wus_type_Homeobox	64.5	2.2e-21	60	117	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW Ptp Q+++Le+++++G tP+k +i++i+aeL+++G+i+++N Nr+aR+++kq Zmw_sc04863.1.g00010.1.sm.mkhc 60 TRQRWQPTPMQLQVLENIFDQGNGTPSKPKIKEIAAELSHHGQISETN------NRRARSKRKQ 117 689******************************************9......******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-6	55	119	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-4	59	120	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-10	60	118	IPR009057	Homeodomain-like
CDD	cd00086	9.60E-8	61	117	No hit	No description
Pfam	PF00046	7.9E-9	61	115	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MTDEQVEVLR TQISVYAPIC EQLVEMHRAL TEHQDSISGM MFSDLYCDPL VVPGRHKIST 60 RQRWQPTPMQ LQVLENIFDQ GNGTPSKPKI KEIAAELSHH GQISETNNRR ARSKRKQAAS 120 LPNNAESEAE ADEESLTDKK PKSDRPFLHN TDRISKMHHF KTEQNQMGDM IYGSSDNLGS 180 SGNPGQMSVY DNIVSNPRTD HFPGKVESSR SFLHIENGEG FDMFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	116	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970378.1	1e-131	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-101	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1E5V6G7	1e-130	A0A1E5V6G7_9POAL; WUSCHEL-related homeobox 8
STRING	Si002508m	1e-130	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]