PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04891.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 256aa    MW: 27861.5 Da    PI: 9.5395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04891.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.9e-144394155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Zmw_sc04891.1.g00070.1.am.mk 43 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 94
                                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.71E-124198No hitNo description
SuperFamilySSF474594.71E-1741113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.5614293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-114394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1443106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-104899IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.025163240IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
RSVSPPPVPP ALAPERGKAS APASRRRRKR PKAVKNQEEM ESQRRNHIAV ERNRRRQMNE  60
YLAVLRSVMP PSYAQRGDQA SIVAGAINFV KELEQTLQTL EAQKRGAQPF AGFFTFPQYS  120
TGAVASGAAS DDNEGLSGGD HHQCAPRRGA ADIEVAVVES HANVKVLAPR RPRQLLRMVV  180
ALQCLGLTVL HLNVTTTADN LAFYTFSLKI EDECRLSSAD EIAAAVNEIL AKISEEDAAG  240
QPSTLAGETS SRERVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14454RNHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828341.11e-109transcription factor bHLH94-like
SwissprotQ9C7T47e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9FQM11e-114A0A0A9FQM1_ARUDO; Uncharacterized protein
STRINGPavir.Aa00538.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]