PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04916.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 455aa MW: 49387 Da PI: 6.4516

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04916.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	98	123	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++++GtC++G +CkF+H+ Zmw_sc04916.1.g00020.1.sm.mkhc 98 PGEPDCSYYLKYGTCRFGTKCKFNHP 123 5789*********************8 PP
2	zf-CCCH	18.9	2.7e-06	223	241	4	22
---SGGGGTS--TTTTT-S CS zf-CCCH 4 elCrffartGtCkyGdrCk 22 e+C+++a G Ck+G Ck Zmw_sc04916.1.g00020.1.sm.mkhc 223 EECKYYATPGGCKFGKACK 241 79****************9 PP
3	zf-CCCH	33.9	5.2e-11	269	293	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C f++rtG Cky +CkF+H+ Zmw_sc04916.1.g00020.1.sm.mkhc 269 GEKECLFYMRTGSCKYSINCKFHHP 293 7899********************9 PP
4	zf-CCCH	24.5	4.9e-08	405	430	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C F+H++ Zmw_sc04916.1.g00020.1.sm.mkhc 405 DQPVCTYYGRFGVCKYGPACMFNHPF 430 5799********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-5	97	124	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.216	97	125	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-8	99	123	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	102	125	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.023	220	246	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.925	224	247	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.9E-5	267	294	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.526	267	295	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-8	269	293	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.09E-5	270	294	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.413	403	431	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0042	404	430	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-5	405	430	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-5	406	430	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MADADAHPPL PGGDAASSPI ASISPSYSAA AAAAIEEQLA GLGLTVAGGE AAFEPSGWDD 60 GPVPVVAGDD EVVPGEKVQA AVATSPAADA RVRFPRRPGE PDCSYYLKYG TCRFGTKCKF 120 NHPARKKKSR APKEEYEGLA PDISDSLGFD DKGSASNSIQ GADDKGSEYT SENYRKTSNE 180 IAAEPENESY SKKLDETNVT KHKIPKGAKD KRRESVAEGS ILEECKYYAT PGGCKFGKAC 240 KNLHREGKEG KPEAEKIDLN FLGLPLRPGE KECLFYMRTG SCKYSINCKF HHPDPSNVSS 300 KKPVLEHENS DTPQENVQAP SQTSVPIWPN QRAMNEQHVP FVAPAQQYNA GMMPPQGVYP 360 SPDWSGYHQV PLNPYYPPGV PFQHYPPHLN HQMYSTADIP GHQQDQPVCT YYGRFGVCKY 420 GPACMFNHPF NFGPPVHAAG PPVPGQYPTP ANFTV

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MADADAHPPL PGGDAASSPI ASISPSYSAA AAAAIEEQLA GLGLTVAGGE AAFEPSGWDD  60
GPVPVVAGDD EVVPGEKVQA AVATSPAADA RVRFPRRPGE PDCSYYLKYG TCRFGTKCKF  120
NHPARKKKSR APKEEYEGLA PDISDSLGFD DKGSASNSIQ GADDKGSEYT SENYRKTSNE  180
IAAEPENESY SKKLDETNVT KHKIPKGAKD KRRESVAEGS ILEECKYYAT PGGCKFGKAC  240
KNLHREGKEG KPEAEKIDLN FLGLPLRPGE KECLFYMRTG SCKYSINCKF HHPDPSNVSS  300
KKPVLEHENS DTPQENVQAP SQTSVPIWPN QRAMNEQHVP FVAPAQQYNA GMMPPQGVYP  360
SPDWSGYHQV PLNPYYPPGV PFQHYPPHLN HQMYSTADIP GHQQDQPVCT YYGRFGVCKY  420
GPACMFNHPF NFGPPVHAAG PPVPGQYPTP ANFTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807655.1	0.0	zinc finger CCCH domain-containing protein 65-like isoform X1
Swissprot	Q2QTY2	1e-172	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	A0A2T7EFS5	0.0	A0A2T7EFS5_9POAL; Uncharacterized protein
STRING	Sb08g012360.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7928	35	48

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]