PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04942.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 247aa    MW: 26883.2 Da    PI: 8.745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04942.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.77.4e-30111531119
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk................kvka....eekewyf 60 
                                   lppGfrF+Ptdeel+v+yL++++ +++l+++  i++++i+ ++P+dL p                 +       +e e yf
  Zmw_sc04942.1.g00020.1.sm.mk  11 LPPGFRFRPTDEELIVHYLRRRAFASPLPAAVDIPDIRILAHDPSDLlPPgelseaslaerslqaaH--RrggwNEPERYF 89 
                                   79***************************9666**************63246899999888765431..1333355588** PP

                           NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgekt 119
                                   F++++ ky +g+r+nrat +gyWkatgk+k+v ++     +  lvg+k++    +++a +++++
  Zmw_sc04942.1.g00020.1.sm.mk  90 FTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVAapggnQAVLVGMKRSXXXRRAQAGEASRA 153
                                   ********************************9988876555569**99988876666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-318165IPR003441NAC domain
PROSITE profilePS5100529.75111189IPR003441NAC domain
PfamPF023653.7E-1612158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDAKEVVRRR LPPGFRFRPT DEELIVHYLR RRAFASPLPA AVDIPDIRIL AHDPSDLLPP  60
GELSEASLAE RSLQAAHRRG GWNEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP  120
VAVAAPGGNQ AVLVGMKRSX XXRRAQAGEA SRADEGWVLC RVFRKRGSSA SDGTAPAEAD  180
ADAERGAEEE GEGDDAAPAS GFIDFFARAD RQRRRRASSP VVTVSSSCLT DASHECRDQD  240
TTSGGCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-211116715170Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215DRQRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.13e-76NAC domain-containing protein 83
TrEMBLA0A3L6RAA24e-84A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGPavir.Cb00769.1.p2e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254