PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04955.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 324aa MW: 33973.8 Da PI: 6.2313

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04955.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.3	1e-27	4	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+a+ ++ ++++sl+yeA+ r+ +Pvy Zmw_sc04955.1.g00020.1.sm.mk 4 SCNGCRVLRKGCSDGCTIRPCLqwikaPEAQANATVFLAKFYGRAGLLNLLAAAaaGPDGPAAVFRSLLYEACGRIVNPVY 84 6************************************************99854567789*************** PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 G+vg+++++q++ +q+++e++l +e Zmw_sc04955.1.g00020.1.sm.mk 85 GSVGLLWSGQWHACQAAVEAVLKGE 109 ****************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.265	3	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-22	4	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKA PEAQANATVF LAKFYGRAGL LNLLAAAAAG 60 PDGPAAVFRS LLYEACGRIV NPVYGSVGLL WSGQWHACQA AVEAVLKGEP VVRVAANSAS 120 SAEHPETEAT PPLSARAACD IRHVGAKDRD ASAAAAAAAA VADLLRVSRA GRTKFKRASS 180 SSTTSKTKPA VVGASKPDNS RASPRPSAQV RDPVVVLGSG DELDDARALS HREESAGSHQ 240 HLDDDCDVAA AQDGSSEDTE AEAGSHVSQA EEHHSHVHAS SQDEDDEEVD LELTLGLEPV 300 AVRHEARSST WNLRRLSAVS MLMG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310953.1	5e-99	LOB domain-containing protein 42-like
TrEMBL	I1IL92	1e-97	I1IL92_BRADI; Uncharacterized protein
STRING	BRADI4G16740.1	2e-98	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127