PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04969.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 142aa    MW: 16135.8 Da    PI: 10.9755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04969.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-1191133855
                                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Zmw_sc04969.1.g00020.1.sm.mkhc  91 IAQKRRERINEKLRVLQQLIPNG-----TKVDISAMLEEAVQYVKFLQ 133
                                     679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002532.7E-15754IPR001209Ribosomal protein S14
SuperFamilySSF474591.57E-1283139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.8483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-1086137No hitNo description
SMARTSM003533.2E-1089138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1191137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-891133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGHSNVWNSH PKNYGPGSRV CRVCANPHGL IRKYGLMCCR QCFRSNAKDI GFIKGETVTA  60
ATNAVAGDKR IFPIDERRNK SKNTNKKPRT IAQKRRERIN EKLRVLQQLI PNGTKVDISA  120
MLEEAVQYVK FLQLQIKVVI SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bd2e-3315415440S ribosomal protein S14
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6Q4B52e-50A0A3L6Q4B5_PANMI; Uncharacterized protein
STRINGOGLUM12G15000.25e-36(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP196223