PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04973.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 78aa MW: 9131.53 Da PI: 6.6298

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04973.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.6	6.9e-11	21	76	4	57
E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETT CS B3 4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksg 57 l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W ++++y+ + + Zmw_sc04973.1.g00090.1.sm.mk 21 MLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDINGKEWLFQFRYWPNNN 76 6789*******************555566778***************77654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-17	16	76	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.19E-13	17	77	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.9E-8	21	76	IPR003340	B3 DNA binding domain
CDD	cd10017	3.41E-15	22	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MEEKMNLSLQ GEWEYQMLLQ MLSASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDI 60 NGKEWLFQFR YWPNNNSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fas_A	3e-33	5	78	1	69	B3 domain-containing transcription repressor VAL1
6fas_B	3e-33	5	78	1	69	B3 domain-containing transcription repressor VAL1
6j9a_A	3e-33	20	78	26	84	B3 domain-containing transcription repressor VAL1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269\|PubMed:17158584, ECO:0000269\|PubMed:17267611}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888018.1	4e-34	B3 domain-containing protein Os07g0563300-like
Refseq	XP_016445999.1	1e-32	PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
Swissprot	Q5CCK4	3e-31	VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBL	A0A0A8Y1C9	2e-32	A0A0A8Y1C9_ARUDO; Uncharacterized protein
TrEMBL	A0A2P2MA13	2e-33	A0A2P2MA13_RHIMU; B3 domain-containing protein Os07g0563300-like
TrEMBL	A0A453BAW7	1e-32	A0A453BAW7_AEGTS; Uncharacterized protein
TrEMBL	W9SRZ6	3e-32	W9SRZ6_9ROSA; B3 domain-containing protein
STRING	XP_010109656.1	5e-33	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7490	36	47

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Chhun T, et al. HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth. Plant Cell Physiol., 2016. 57(8): p. 1689-706 [PMID:27335347] Yuan W, et al. A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis. Nat. Genet., 2016. 48(12): p. 1527-1534 [PMID:27819666] Li C,Cui Y A DNA element that remembers winter. Nat. Genet., 2016. 48(12): p. 1451-1452 [PMID:27898079]