PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04986.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 220aa MW: 23960.1 Da PI: 9.4682

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04986.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	105	174	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksLq 55 +r+ah ++Er+RR+ +N+ ++ Lr l+P ++ ++ + + a+++ A++Y+k+L+ Zmw_sc04986.1.g00010.1.sm.mk 105 QRMAHIAVERNRRRLMNDHLASLRALIPASYiprysvimfvtnhatFEYVEQGDQATVVGGAIDYVKQLE 174 79*************************888********9988899999***********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-13	96	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-13	103	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.49E-8	103	171	No hit	No description
PROSITE profile	PS50888	13.795	104	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-9	105	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-7	110	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MAVMEQWADQ QAASATAGTA QMPFLALLQG AVLDNDDANR CKRADAADID LLESCVTQAA 60 AAVTVASSST SATKAESRRR KRPRPRPRAA PQQKKRKKPE EAESQRMAHI AVERNRRRLM 120 NDHLASLRAL IPASYIPRYS VIMFVTNHAT FEYVEQGDQA TVVGGAIDYV KQLEQQLLAL 180 QAEATARRGC RGSACAMATA ATSDGVFVSP QYTSYSEART

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	87	RRRKRPRPRPR
2	79	85	RKRPRPR
3	79	97	RKRPRPRPRAAPQQKKRKK
4	80	84	KRPRP
5	93	97	KKRKK
6	105	116	RMAHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798239.1	7e-51	transcription factor bHLH57-like
TrEMBL	A0A1D6PKX5	3e-62	A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRING	OB03G11710.1	4e-58	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7957	33	44