PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05005.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 490aa    MW: 52933.4 Da    PI: 6.8196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05005.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-3295151259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g+H h+
  Zmw_sc05005.1.g00010.1.sm.mkhc  95 EDGYNWRKYGQKQVKNSEYPRSYYKCTHPDCPVKKKVERSQ-DGHITEIVYNGSHSHP 151
                                     7****************************************.***************8 PP
2WRKY101.35.8e-32295353159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC v+k+ver+++d k v++ Yeg+Hnhe
  Zmw_sc05005.1.g00010.1.sm.mkhc 295 LDDGYRWRKYGQKVVKGNTNPRSYYKCTHAGCGVRKHVERASNDLKSVITSYEGKHNHE 353
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2989153IPR003657WRKY domain
SuperFamilySSF1182905.36E-2692153IPR003657WRKY domain
SMARTSM007746.8E-3694152IPR003657WRKY domain
PfamPF031064.2E-2595151IPR003657WRKY domain
PROSITE profilePS5081122.57395153IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-35280355IPR003657WRKY domain
SuperFamilySSF1182904.58E-28287355IPR003657WRKY domain
PROSITE profilePS5081136.013290355IPR003657WRKY domain
SMARTSM007743.2E-35295354IPR003657WRKY domain
PfamPF031061.3E-24296353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAARTGFGVL KIDTSHGPSI VHQNQASADY NHQQEPSLQS NSTGTKDATD ANLVKPKTCD  60
SNLDNDHPSP TDEEEESEES QNGEHSSALV TAPPEDGYNW RKYGQKQVKN SEYPRSYYKC  120
THPDCPVKKK VERSQDGHIT EIVYNGSHSH PSPQPNRQPS FNDLQADGQE DLGSKPGQDA  180
AASLGSTPNG HTHDVHCGVL ETKMTGYLVT TDLANTSAME SREAMDVSKD DEATHGSIPL  240
NFDGENADNE SKRRKMDVSA TTNNTTSTFD VAAMASRAVR EPRIIVQTTS EVDILDDGYR  300
WRKYGQKVVK GNTNPRSYYK CTHAGCGVRK HVERASNDLK SVITSYEGKH NHEVPAARNS  360
RGHPSSAQEG CGNLHQMPQL AQASIVQFSG VPAFGSVSLP AQLGAGSGGF CFGMFPPGMA  420
VPVPPGAAVP AVPMRVPRHT SAMQHCPGVM LPRGEVKVNP KEQSSLPVAT RSGTATYHQI  480
MGRLPQGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3595356878Probable WRKY transcription factor 4
2lex_A2e-3595356878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
SwissprotO655902e-87WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A2T7D8Y40.0A0A2T7D8Y4_9POAL; Uncharacterized protein
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]