PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05010.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 165aa    MW: 17799.8 Da    PI: 6.5082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05010.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003488110123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  Cg  Fs    L  H+r+H
  Zmw_sc05010.1.g00090.1.sm.mk  88 HQCAVCGLEFSMGQALGGHMRRH 110
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.57E-54168No hitNo description
PfamPF139123.1E-104366IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7234471IPR007087Zinc finger, C2H2
SMARTSM003551.14466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-686115No hitNo description
Gene3DG3DSA:3.30.160.607.4E-586115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.4488110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.15488115IPR007087Zinc finger, C2H2
PfamPF139122.5E-1088112IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTPARQEAEE SKEMEGLRAN ADALLSLSSS SSSSRKAMAA EGVFECKTCR RRFPSFQALG  60
GHSTSHTRLQ ARTLGDHPPQ RDGRARMHQC AVCGLEFSMG QALGGHMRRH RGEAPPAVAA  120
RQQEEEAMPD LNFPLLEEDG GGSGGRTDQE PSSSGDQPQL LNLLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.12e-61zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN85e-60A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP55e-60A0A2T7DEP5_9POAL; Uncharacterized protein
STRINGBRADI2G54500.12e-53(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157