PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05015.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 260aa MW: 28134.8 Da PI: 9.3128

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05015.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	86.4	7.7e-27	22	142	6	121
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee.....lleelkvee 79 eq+Cyv+Cn+C+tilav vP +slfk+v+vrCGhC++llsvnl+ l+a ++l +++l + ll+++ Zmw_sc05015.1.g00030.1.sm.mk 22 EQEQLCYVHCNYCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRSLL--LPAANQLpfGQALLSPtsphgLLDDMPPFA 100 679***************************************9987654..555554411333333345558999999999 PP YABBY 80 enlksnvekeesastsvsseklsenedeevprvppvirPPek 121 + s ++e++as +vs+ + s+n+ ++ + ++ PP k Zmw_sc05015.1.g00030.1.sm.mk 101 APTPSLLSAEQAASPTVSTITSSNNSYGNSMSAMSINAPPPK 142 999999999999999988888888888777778888888877 PP
2	YABBY	120.3	3e-37	172	245	94	170
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++++ ++ ++p v+++ r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl Zmw_sc05015.1.g00030.1.sm.mk 172 QKAQNFT---VDSSQLPTVKHAHRATEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 245 3333333...3345567777899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.2E-63	22	245	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-7	188	238	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.8E-4	197	237	IPR009071	High mobility group box domain
CDD	cd00084	7.86E-5	199	235	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MSSVPETFAT DPHLVQPPAA AEQEQLCYVH CNYCDTILAV GVPCSSLFKT VAVRCGHCAN 60 LLSVNLRSLL LPAANQLPFG QALLSPTSPH GLLDDMPPFA APTPSLLSAE QAASPTVSTI 120 TSSNNSYGNS MSAMSINAPP PKSASPEPQQ QQPKSASSGN RKSFGWSRLK SQKAQNFTVD 180 SSQLPTVKHA HRATEKRQRV PSAYNRFIKD EIQRIKASNP DITHREAFSA AAKNWAHFPH 240 IHFGLMPDQG LKKTSIQNQV

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976365.1	1e-107	protein YABBY 5
Swissprot	Q01JG2	1e-103	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-103	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0A9NXW5	1e-110	A0A0A9NXW5_ARUDO; ZYB14
STRING	Si010859m	1e-107	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]