PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05022.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 164aa MW: 17907.2 Da PI: 5.3651

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05022.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.5e-10	5	34	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE++ l ++v ++G g W+tI + Zmw_sc05022.1.g00060.1.sm.mkhc 5 KQKWTQEEEDALRRGVVKHGAGKWRTIQKD 34 79*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.252	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.99E-11	2	51	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-11	5	51	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-7	5	33	IPR001005	SANT/Myb domain
CDD	cd11660	9.00E-16	6	51	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGAPKQKWTQ EEEDALRRGV VKHGAGKWRT IQKDPEFSPT LSSRSNIDLK DLLLPAPNKI 60 AEASAPADAE KKPLDAKNSA NNDMRCKGNQ TLEDPGLEAA SAAAAKAADA EAKAHLAHEH 120 MMEAERILKM AEETESLLFL AAEIYDRCSK GEIITVNPVS QKEF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159639.1	1e-43	single myb histone 4-like isoform X4
Swissprot	Q6WLH4	3e-32	SMH3_MAIZE; Single myb histone 3
TrEMBL	A0A3B6EJB4	6e-48	A0A3B6EJB4_WHEAT; Uncharacterized protein
STRING	ONIVA01G32190.1	5e-48	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25616	3	5

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]