PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05037.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 468aa MW: 48917.6 Da PI: 7.2004

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05037.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.9	6e-18	385	418	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ kTp+WR gp g+ktLCnaCG++y++ + Zmw_sc05037.1.g00020.1.am.mk 385 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 418 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.43E-14	377	441	No hit	No description
PROSITE profile	PS50114	11.147	379	415	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.7E-15	379	429	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.9E-14	383	416	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.52E-14	384	441	No hit	No description
PROSITE pattern	PS00344	0	385	410	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.3E-15	385	418	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MASGVFAEQM AREQSLLEAT CGDLFDHIDD LLDFSKEESA ADVLLLDAPA PGSPISARII 60 DVGARRSDAP VTAAVVQPPT LVQPPTGDAF FEDVAGAHGF KDGAGHIGSS KVVFAVSPRR 120 NDGRGAGGWP ARAYQQAASV TRGAAVRGDY LSVRGGWLGG GWGCRCSCED LDMAQLEWLS 180 GLFDDASIPH EPAFPARTTC AAPIKSSALA ANGHMPPPLP DKLDDAVFRS SSPTSVLEHN 240 GFNAGSSNTN AAAGSASSSS TNSSSSSSSA WSAPVTSPRP DPPVLVIPAR ARSKRSRPSA 300 FASGRAVEPP TILVPTPMFS AASSLSDPES IAESNPDPAP AKKKKAKKPA APAPAASDAE 360 GDGDGDADYV EGGERSQPQG TVRRCTHCQI EKTPQWRAGP LGPKTLCNAC GVRYKSGRLF 420 PEYRPAASPT FVPSIHSNSH KKVVEMRQKA VRSGDPSCDL LQFIRRRD

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MASGVFAEQM AREQSLLEAT CGDLFDHIDD LLDFSKEESA ADVLLLDAPA PGSPISARII  60
DVGARRSDAP VTAAVVQPPT LVQPPTGDAF FEDVAGAHGF KDGAGHIGSS KVVFAVSPRR  120
NDGRGAGGWP ARAYQQAASV TRGAAVRGDY LSVRGGWLGG GWGCRCSCED LDMAQLEWLS  180
GLFDDASIPH EPAFPARTTC AAPIKSSALA ANGHMPPPLP DKLDDAVFRS SSPTSVLEHN  240
GFNAGSSNTN AAAGSASSSS TNSSSSSSSA WSAPVTSPRP DPPVLVIPAR ARSKRSRPSA  300
FASGRAVEPP TILVPTPMFS AASSLSDPES IAESNPDPAP AKKKKAKKPA APAPAASDAE  360
GDGDGDADYV EGGERSQPQG TVRRCTHCQI EKTPQWRAGP LGPKTLCNAC GVRYKSGRLF  420
PEYRPAASPT FVPSIHSNSH KKVVEMRQKA VRSGDPSCDL LQFIRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954283.1	1e-149	GATA transcription factor 8
Refseq	XP_004954284.1	1e-149	GATA transcription factor 8
TrEMBL	K3YSS2	1e-148	K3YSS2_SETIT; Uncharacterized protein
STRING	Pavir.Ab03246.1.p	1e-169	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5169	34	51