PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05069.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 313aa    MW: 33170.4 Da    PI: 8.07
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05069.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07252294343
                                   SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                                    W+t +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  Zmw_sc05069.1.g00050.1.sm.mk 252 DWSTGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 294
                                   6********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.831160201IPR017877Myb-like domain
SMARTSM007170.057164216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4165202IPR009057Homeodomain-like
SuperFamilySSF466894.6E-7166206IPR009057Homeodomain-like
CDDcd001674.17E-4168209No hitNo description
PROSITE profilePS500906.702245299IPR017877Myb-like domain
SuperFamilySSF466891.56E-9249299IPR009057Homeodomain-like
SMARTSM007178.2E-6249301IPR001005SANT/Myb domain
PfamPF002494.0E-6252294IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-5252298IPR009057Homeodomain-like
CDDcd001671.49E-6253299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEFIDEWDYQ PRARVVHSGA NSTPSSSTAT GKSSPTLPHA AACAAAAVLL IAAAYYLPAA  60
YQVFSSMLIW IAASLLLAPF APSSATGGDI SVGRGRLIPA PEPAQEPISD PVPAPRRGRR  120
QNPTAPQPKL SDPITAPVQP AASLQPLREA AAVADGCEKE EEGDDGEWTD QELELLRRQM  180
VKHPAGEPQR WEKIAAAFGG RRRPESVIHA AKSGAAVSAG GSFEQFLRKR KPLDPRAEAV  240
DAGGNTGGAD SDWSTGDDRA LLNALKEFPK DTAMRWEKVA AAVPGKTKAA CMKRVTELKR  300
DFRSSKGASE AAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231LRKRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972787.11e-141dnaJ homolog subfamily C member 2
TrEMBLK3YIP41e-140K3YIP4_SETIT; Uncharacterized protein
STRINGSi014113m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731