PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05087.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 245aa    MW: 26642.5 Da    PI: 6.0266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05087.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.59.7e-222790358
                                  -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.....EEEEEES--SS CS
                          WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.....veitYegeHnh 58
                                  Dgy+WrKYGqK+++g+ +prsYYrC+ +   +Cp+k+ v+r+++  ++      +++Y  eH++
  Zmw_sc05087.1.g00010.1.sm.mk 27 DGYQWRKYGQKQIEGAMYPRSYYRCARSaeqRCPAKRTVQRNDDGDDIsgslkYTVVYMAEHTC 90
                                  9************************9877789**********9655542222357999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-221191IPR003657WRKY domain
SuperFamilySSF1182904.32E-202091IPR003657WRKY domain
SMARTSM007749.2E-262592IPR003657WRKY domain
PROSITE profilePS5081117.662768IPR003657WRKY domain
PfamPF031067.0E-232790IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSDGSNASCR KTKQASICHV TSVPDFDGYQ WRKYGQKQIE GAMYPRSYYR CARSAEQRCP  60
AKRTVQRNDD GDDISGSLKY TVVYMAEHTC AADDSTEKPR RPKKSCGTKN IAAPAAFLPP  120
EAEARYDAAA LVDPAAAADS SVTRPASTTV TITGTAESPA ISDVTWSGTA NNNELHDDLL  180
RDGLFAVDHR CAEMSSLLVH KDMDDFTGPI RSPVHIASGD WTVDHLHLLH LVNEPISDSS  240
AGFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-1327901068OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9HC423e-65A0A0A9HC42_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058