PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05089.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 266aa    MW: 29623.9 Da    PI: 4.7794
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05089.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix544.4e-171523185
                      trihelix 31 WeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
                                  W++v++++r++g+er+++qC+++w+nl+++ykkike+e+   + +  + p f  +
  Zmw_sc05089.1.g00010.1.sm.mk  1 WAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKEWERAA-PAA--REPSFWAM 52
                                  ***************************************86.333..24666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-8152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
WAAVAEYCRR HGVERGAVQC RKRWSNLAGD YKKIKEWERA APAAREPSFW AMRNDARRER  60
RLPGFFDREV YDILEGRGRA ILGGRAGRNA AEEEVVEVVV PVEEEKEAGP AEPVFDSGRP  120
ATEEALFSEE EEEEEEQPTA AAPPPPPTVV ALPISEKPEA SRQQQRAEQG PSKDKQPEQS  180
TSKDAPAPQG GQKRPRTDED TGEGTTDLQS KLIEILDRNS RMVAAQLEAH NLNCQLDREQ  240
RKDQANSLVL VLGRLADALG RIADKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798066.11e-142trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2S3GPV41e-140A0A2S3GPV4_9POAL; Uncharacterized protein
TrEMBLA0A3L6RWU91e-140A0A3L6RWU9_PANMI; Trihelix transcription factor ASR3-like
STRINGPavir.Ab01295.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648