PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05093.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 240aa MW: 26291.5 Da PI: 7.7814

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05093.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53.8	4.2e-17	76	127	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 kr rr+ +NRe+ArrsR+RK+a+++eLe v++L++eN +L k+l e +++ Zmw_sc05093.1.g00050.1.sm.mk 76 TKRIRRMVSNRESARRSRRRKQAQLAELESQVEQLKGENATLFKQLAEANQQ 127 69*****************************************887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-16	71	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-15	75	127	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.438	75	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.97E-12	77	129	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.1E-14	77	128	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDGSSDDNLW WSGSIRTPEP ESSITAECQR ASVSAASPRG TSSTNHGHES QSDSDSESLI 60 DVEAIPCERR TKSLQTKRIR RMVSNRESAR RSRRRKQAQL AELESQVEQL KGENATLFKQ 120 LAEANQQFTT AVTDNRILKS DVEALRVKVK MAEDMVARSA MSCGLGDLGV APLMNSRKMC 180 QALGMLTVTG LDLLGRDACF RGPTPARQVQ NSPVQSTASL ESIDNRKSSE VTSCAVDMWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	96	RRSRRRKQ
2	91	96	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	1e-113	bZIP transcription factor RISBZ5
Swissprot	Q654B3	2e-86	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	K3XZ62	1e-112	K3XZ62_SETIT; Uncharacterized protein
STRING	Pavir.Da00268.1.p	1e-112	(Panicum virgatum)
STRING	Si007043m	1e-112	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]