PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05178.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 135aa MW: 15515.9 Da PI: 10.2703

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05178.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.1	6.4e-25	54	100	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+ Zmw_sc05178.1.g00040.1.am.mk 54 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 100 8********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.52	45	105	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-25	45	105	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.6E-35	45	104	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.79E-35	46	105	No hit	No description
PRINTS	PR00404	1.3E-26	47	67	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	47	101	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-23	54	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	67	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	82	103	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MHRCKLEDWN SKQHARAGQR RDVTWRESNE EEEEEATFAT RSTSMARGKI QLRRIENPVH 60 RQVTFCKRRA GLLKKARELS VLCDAHIGII IFSAHGKLYD LATTGYLCRL LCRALLLASS 120 WMSTSVVLST GLWKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-16	45	104	1	60	MEF2C
5f28_B	2e-16	45	104	1	60	MEF2C
5f28_C	2e-16	45	104	1	60	MEF2C
5f28_D	2e-16	45	104	1	60	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443744.1	6e-38	MADS-box transcription factor 26
Swissprot	A2YQK9	2e-36	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	2e-36	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	C5YLY7	1e-36	C5YLY7_SORBI; Uncharacterized protein
STRING	Sb07g001250.1	2e-37	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]