PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05232.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 575aa MW: 61248.2 Da PI: 6.9938

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05232.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	254.6	3.6e-78	223	574	3	364
GRAS 3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 +L e+Ae ++gd a+a+Larl+++ a +g+p++R a+yf+eAL+ l+ ++ +p++ ++ ++ ++ a Zmw_sc05232.1.g00100.1.am.mk 223 GQLAEAAELAEAGDVLGARAILARLNNRfpaAPTAGTPLHRCAFYFKEALRVALST---TTG-D-APTAPTPVDVLLKIGA 298 689**********************999555566**************99...222.2.45555567899* PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....ske 156 +k+fsev P+++f+h+t+ qa+l+++ g+ ++H++Df+i+ G QW++L+q+La+R+ + sl++T+++s s+ Zmw_sc05232.1.g00100.1.am.mk 299 YKAFSEVAPVVQFAHFTCVQAVLDELGGAGCIHVLDFEIGVGDQWASLMQELAQRR-PGTSLKVTALVSTPSSsphhrLPL 378 **************************************************95.558**988555567766678 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 el+ ++e+L++fA+ +vpf+f v+ +le+ ++ e L++ g+a+aV+l + +++s +L+lv++l + Zmw_sc05232.1.g00100.1.am.mk 379 ELQLVQENLSSFAADARVPFQFAVF---SLESTDPtEILAMAAGDAIAVHLPVGCSVHT---PAMPS----ILHLVRRLGA 449 99******************8...566665515578888*****9776654...56666....****** PP GRAS 237 kvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 k+vv v++ +d+ ++ +F++++++a++ ++ l++sl+a s k+Er l++++i+++v + + + + Wr Zmw_sc05232.1.g00100.1.am.mk 450 KLVVTVDRSCDRrSELPFAAHLFQAFQSCVFLLESLDAV---GSTGSDKIERLLIQPRIESCVVSKYRGAI-AGDRTPPWR 526 ********8999****************998...689999****************955.556699* PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 + l +aGF pv+ s++a++qa++ll+kv+++g+rve++ gsl+l W++ Zmw_sc05232.1.g00100.1.am.mk 527 ALLASAGFVPVQASSFAEAQADSLLKKVPVRGFRVEKRAGSLLLHWQR 574 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.729	195	564	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-75	223	574	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MLRFLDSPSP RPLVGKGCCC AVVALPAVCL TQLVSCLPPS AAHTHDTPSR LSPRLYYYSY 60 SVLDHRPSAK PLPPRSASTL SSPLRDVAAL AGATNAKSVS PPPPAWPPGD DDGAPGPGGK 120 EDTSWIHHLP PLDHMSSQQQ DNTFLHWIIG GDVSTAQAMP SGVTEHHPVL ADSVPPHQPL 180 PFPPPQPLVF HPSMDIAVTR HQPTAAVLKP TKPEEDDTAA AVGQLAEAAE LAEAGDVLGA 240 RAILARLNNR FPAAPTAGTP LHRCAFYFKE ALRVALSTTT GDAPTAPTPV DVLLKIGAYK 300 AFSEVAPVVQ FAHFTCVQAV LDELGGAGCI HVLDFEIGVG DQWASLMQEL AQRRPGTSLK 360 VTALVSTPSS SPHHRLPLEL QLVQENLSSF AADARVPFQF AVFSLESTDP TEILAMAAGD 420 AIAVHLPVGC SVHTPAMPSI LHLVRRLGAK LVVTVDRSCD RRSELPFAAH LFQAFQSCVF 480 LLESLDAVGS TGSDKIERLL IQPRIESCVV SKYRGAIAGD RTPPWRALLA SAGFVPVQAS 540 SFAEAQADSL LKKVPVRGFR VEKRAGSLLL HWQRG

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MLRFLDSPSP RPLVGKGCCC AVVALPAVCL TQLVSCLPPS AAHTHDTPSR LSPRLYYYSY  60
SVLDHRPSAK PLPPRSASTL SSPLRDVAAL AGATNAKSVS PPPPAWPPGD DDGAPGPGGK  120
EDTSWIHHLP PLDHMSSQQQ DNTFLHWIIG GDVSTAQAMP SGVTEHHPVL ADSVPPHQPL  180
PFPPPQPLVF HPSMDIAVTR HQPTAAVLKP TKPEEDDTAA AVGQLAEAAE LAEAGDVLGA  240
RAILARLNNR FPAAPTAGTP LHRCAFYFKE ALRVALSTTT GDAPTAPTPV DVLLKIGAYK  300
AFSEVAPVVQ FAHFTCVQAV LDELGGAGCI HVLDFEIGVG DQWASLMQEL AQRRPGTSLK  360
VTALVSTPSS SPHHRLPLEL QLVQENLSSF AADARVPFQF AVFSLESTDP TEILAMAAGD  420
AIAVHLPVGC SVHTPAMPSI LHLVRRLGAK LVVTVDRSCD RRSELPFAAH LFQAFQSCVF  480
LLESLDAVGS TGSDKIERLL IQPRIESCVV SKYRGAIAGD RTPPWRALLA SAGFVPVQAS  540
SFAEAQADSL LKKVPVRGFR VEKRAGSLLL HWQRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-21	253	551	32	340	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468689.2	0.0	scarecrow-like protein 6
TrEMBL	A0A0A9H9V7	0.0	A0A0A9H9V7_ARUDO; Uncharacterized protein
STRING	BRADI1G78230.1	1e-177	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6723	29	54