PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05278.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 177aa MW: 19956.6 Da PI: 8.7748

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05278.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	87	142	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+++++t+eq+++Le Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa+++ Zmw_sc05278.1.g00010.1.am.mk 87 RTKRRLTAEQVQALEVSFEEeKRKLEPERKNELARRLGIAPRQVAVWFQNRRARWR 142 77889************98********************************9 PP
2	HD-ZIP_I/II	117.2	9.3e-38	88	176	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 krrl++eqv++LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR++tkqlE+d+++L++a+d+l + +++L Zmw_sc05278.1.g00010.1.am.mk 88 TKRRLTAEQVQALEVSFEEEKrKLEPERKNELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFDRLRAAHDELLAGRDALV 168 69**************9999******************************************************* PP HD-ZIP_I/II 82 keveeLre 89 +++++Lr+ Zmw_sc05278.1.g00010.1.am.mk 169 ADNDRLRS 176 ****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.41E-17	77	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.783	83	144	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	85	148	IPR001356	Homeobox domain
CDD	cd00086	5.89E-15	87	145	No hit	No description
Pfam	PF00046	2.5E-16	87	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-19	93	143	IPR009057	Homeodomain-like
PRINTS	PR00031	3.0E-6	115	124	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.0E-6	124	140	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.7E-10	144	177	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDSGRLMISS AAAPFCSALA GGSQVLQFGG GFRGGTSMAA AVAENGRRKR PFFTPHEALQ 60 LELGLDIMDN VDQLCGFEYE LQGAPERTKR RLTAEQVQAL EVSFEEEKRK LEPERKNELA 120 RRLGIAPRQV AVWFQNRRAR WRTKQLEQDF DRLRAAHDEL LAGRDALVAD NDRLRSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804293.1	8e-68	homeobox-leucine zipper protein HOX25-like
Swissprot	A3BYC1	4e-51	HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBL	A0A2T7ERW1	2e-68	A0A2T7ERW1_9POAL; Uncharacterized protein
STRING	MLOC_65462.1	1e-60	(Hordeum vulgare)
STRING	Sb02g023650.1	5e-60	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12756	27	35