PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05287.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 512aa MW: 53954.8 Da PI: 10.5738

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05287.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.5e-42	263	361	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ Zmw_sc05287.1.g00020.1.am.mk 263 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPCQREDAVNSLAYEADMRLRDPVYGCVGVIS 343 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq++l+q ++el +++ Zmw_sc05287.1.g00020.1.am.mk 344 VLQHRLRQIQQELTRAHY 361 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.842	262	363	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	263	359	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MPDQLPAKEA CVDKTCLRPT ERVLKPATGC FSCWSLTPAS RALLQRLRDR PSIQSPTGTI 60 TSQPRESRSL APPDPGWRIN HWSPAHGLWG GGDLLWSAVF AATYAARPTA RTPRAEKNAS 120 RRWPAGIPGG ASEERTTPLI DPGRARPGHH RGGCACRRSA LQARSTGLNS PGSRRSVPDV 180 IGRGSEAEQQ RGRKPRRRTL PHGKHTGVGS TEKGRKRGRS MGSSSASSVP VSTTGSVITG 240 TAASSPTVGS ISLGAAGTGT GSPCAACKFL RRKCQPDCVF APYFPPDNPQ KFVHVHRVFG 300 ASNVTKILNE LHPCQREDAV NSLAYEADMR LRDPVYGCVG VISVLQHRLR QIQQELTRAH 360 YELSKYQVAA EAAAAASATV GSNAGPAPMP DFIGNPVPNC TQNFINMGGH SMAATIGGAG 420 FMQHDQFATV QMLARSYDAE PTTTARVGLS VGGGGDGGYG FGYSSSLGGE HSGLGSISGP 480 FLSPAPPAGT SAPQPRSSGM FSHLRQVRST AL

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MPDQLPAKEA CVDKTCLRPT ERVLKPATGC FSCWSLTPAS RALLQRLRDR PSIQSPTGTI  60
TSQPRESRSL APPDPGWRIN HWSPAHGLWG GGDLLWSAVF AATYAARPTA RTPRAEKNAS  120
RRWPAGIPGG ASEERTTPLI DPGRARPGHH RGGCACRRSA LQARSTGLNS PGSRRSVPDV  180
IGRGSEAEQQ RGRKPRRRTL PHGKHTGVGS TEKGRKRGRS MGSSSASSVP VSTTGSVITG  240
TAASSPTVGS ISLGAAGTGT GSPCAACKFL RRKCQPDCVF APYFPPDNPQ KFVHVHRVFG  300
ASNVTKILNE LHPCQREDAV NSLAYEADMR LRDPVYGCVG VISVLQHRLR QIQQELTRAH  360
YELSKYQVAA EAAAAASATV GSNAGPAPMP DFIGNPVPNC TQNFINMGGH SMAATIGGAG  420
FMQHDQFATV QMLARSYDAE PTTTARVGLS VGGGGDGGYG FGYSSSLGGE HSGLGSISGP  480
FLSPAPPAGT SAPQPRSSGM FSHLRQVRST AL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-51	259	366	7	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-51	259	366	7	114	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808846.1	1e-108	LOB domain-containing protein 6-like
TrEMBL	A0A2S3HCF2	1e-107	A0A2S3HCF2_9POAL; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95