PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05299.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 508aa    MW: 55735.3 Da    PI: 6.8883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05299.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.55.3e-100475001374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                   l++lL++cA  v++g + +a+ +L+++ +las d+  +++Rlaa+f+ ALa++l++ v++l++al +s++++ +   + aa
  Zmw_sc05299.1.g00030.1.am.mk  47 LIHLLYQCAAQVAAGAFDNANFYLEQITQLASLDApLTLHRLAAVFADALARKLLNLVPGLSRALMTSTADSAEAHLVPAA 127
                                   689********************************89*****************************999999999999999 PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                   ++ +++  P+lk+++l++N+aI ea+ege+ vH++D++    +++QW+aL++ +  R++g+p+lRiT+v+s    ske l 
  Zmw_sc05299.1.g00030.1.am.mk 128 RQHLFDKLPFLKLAYLATNRAIFEAMEGERFVHVVDLSgpTANPVQWIALFHLFCGRRKGAPHLRITAVHS----SKEFLA 204
                                   999**********************************955689****************************....9***** PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll...................... 214
                                   +++  L+k Ae++++pf+f++ v+++l++l++++L     v++gEala+++v qlhrll                      
  Zmw_sc05299.1.g00030.1.am.mk 205 NMAGILTKEAEAFDIPFQFSA-VESSLDELDIDALhqvlGVRSGEALAISVVAQLHRLLaaddaskrhggsssltplqfia 284
                                   *********************.7999****9999855557888************************************** PP

                          GRAS 215 ..........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                                                             + +++ + +  +++++vk lsPk++vv+e ea+hn++sF
  Zmw_sc05299.1.g00030.1.am.mk 285 rssprsfgellerelntrlqlspdsssvlsslspqspgsglaAAQHQRSAKLGKFMSAVKALSPKIMVVTELEANHNAASF 365
                                   *****************************************9555555556888*************************** PP

                          GRAS 254 lerflealeyysalfdsleak..........lpres..eerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                    erf ea++yy++lfd+le            +++++   er+  E  +lg+ei+ vva egaer+erhe+l++W +r++ a
  Zmw_sc05299.1.g00030.1.am.mk 366 QERFDEAVNYYASLFDCLEHAsaaaaqqrhhYHHDAvaAERVRAESLVLGEEIRGVVAREGAERKERHERLAQWARRMDCA 446
                                   ******************6665777777776333336699***************************************** PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   G++ v+ls+ ++++a+ ll  +++ gy v ++   + l++ W+++pL+s+SaWr
  Zmw_sc05299.1.g00030.1.am.mk 447 GMERVELSYIVMMEARKLLLSCGWGGYDVTQDarGDGLFFWWHRKPLYSISAWR 500
                                   *****************************9764478899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.38121478IPR005202Transcription factor GRAS
PfamPF035141.8E-9747500IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MLSEDMASST ATSSPASSLY TPSPHGYWCG YGSWVQELTS DNEGVRLIHL LYQCAAQVAA  60
GAFDNANFYL EQITQLASLD APLTLHRLAA VFADALARKL LNLVPGLSRA LMTSTADSAE  120
AHLVPAARQH LFDKLPFLKL AYLATNRAIF EAMEGERFVH VVDLSGPTAN PVQWIALFHL  180
FCGRRKGAPH LRITAVHSSK EFLANMAGIL TKEAEAFDIP FQFSAVESSL DELDIDALHQ  240
VLGVRSGEAL AISVVAQLHR LLAADDASKR HGGSSSLTPL QFIARSSPRS FGELLERELN  300
TRLQLSPDSS SVLSSLSPQS PGSGLAAAQH QRSAKLGKFM SAVKALSPKI MVVTELEANH  360
NAASFQERFD EAVNYYASLF DCLEHASAAA AQQRHHYHHD AVAAERVRAE SLVLGEEIRG  420
VVAREGAERK ERHERLAQWA RRMDCAGMER VELSYIVMME ARKLLLSCGW GGYDVTQDAR  480
GDGLFFWWHR KPLYSISAWR PAASRLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-22352527217Protein SCARECROW
5b3h_A3e-22352526216Protein SCARECROW
5b3h_D3e-22352526216Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLK3Y6U20.0K3Y6U2_SETIT; Uncharacterized protein
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176