PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05300.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 229aa MW: 24860.4 Da PI: 4.9586

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05300.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	23.9	8.6e-08	6	38	18	50
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllska 50 ++++P rikki++adedv +i+ +Pvl+ a Zmw_sc05300.1.g00050.1.sm.mkhc 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVKAA 38 5789***********************997544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.1E-10	3	38	IPR009072	Histone-fold
SuperFamily	SSF47113	4.15E-5	4	38	IPR009072	Histone-fold
Pfam	PF00808	1.9E-5	8	37	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVKAAED GSEADLKRTR NESENHTGNR 60 RGRGRGRGRG RRGGRGGRGA GKELYITHAK FNDQSSKPAD PKFEVAEEVL SATEAKEATT 120 ESSGRACLRN FDLNLDAAEE DEATVPSQTQ STDLTTSLAA ATSGPSVPQL NEGAATAGLS 180 APRSNEVPKL KDFLEWQLPD MNNMTMDPVQ YALSTNHTSE ADEDYDNEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	69	RGRGRGRGRG
2	60	70	RGRGRGRGRGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961645.1	1e-40	dr1-associated corepressor isoform X1
Refseq	XP_004961646.1	5e-41	dr1-associated corepressor isoform X2
Refseq	XP_022681105.1	6e-41	dr1-associated corepressor isoform X3
TrEMBL	A0A0A9G083	2e-45	A0A0A9G083_ARUDO; Uncharacterized protein
STRING	Pavir.J02260.1.p	1e-44	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79