PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05344.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 230aa    MW: 24085 Da    PI: 8.8219
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05344.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-083257227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                  kt+ C  +     Ck+G++C+FaHg+
  Zmw_sc05344.1.g00050.1.am.mk 32 KTRMCTKYNTAEGCKFGEKCHFAHGE 57
                                  9***********************96 PP
2zf-CCCH40.93.4e-13197222127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   ykt+lC ++++ GtC +GdrC+FaHg+
  Zmw_sc05344.1.g00050.1.am.mk 197 YKTKLCENYLK-GTCTFGDRCHFAHGE 222
                                   9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-132862IPR000571Zinc finger, CCCH-type
SMARTSM003560.273057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.453058IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-83061IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-43257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.43E-1487165IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-1494165IPR004088K Homology domain, type 1
SMARTSM003221.0E-1095165IPR004087K Homology domain
PROSITE profilePS5008414.88696160IPR004088K Homology domain, type 1
PfamPF000134.5E-1198160IPR004088K Homology domain, type 1
SMARTSM003565.6E-9196222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-9196226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-15196226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.873196223IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10197222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLNLDSPVVS APTRVPVDHA AVTNSHPSST GKTRMCTKYN TAEGCKFGEK CHFAHGEREL  60
GKPAYMSHEV DGRFGGWPEP RPQTTMGPPA GNFGASATAK ISVDASLAGG IIGKGGANTK  120
HISRVTGVKL SIRDHESDAN LKNIELEGNF DQIKQASDMV GELISTISAS MPAKHPSGPT  180
APAGRGGGGG PGGRGNYKTK LCENYLKGTC TFGDRCHFAH GESEQRRGPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-120zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-103C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A1B6PNX01e-120A0A1B6PNX0_SORBI; Uncharacterized protein
STRINGSb06g032000.11e-119(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]