PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05346.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 303aa MW: 32568.3 Da PI: 8.4158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05346.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	197	234	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Lek+v+++ Lq Zmw_sc05346.1.g00060.1.sm.mkhc 197 RQLIQDRIKELRELVPNgA------KCSIDALLEKTVKHMLFLQ 234 67799**********66......999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.0E-28	6	151	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.00108	178	234	No hit	No description
PROSITE profile	PS50888	10.487	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-5	197	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-5	197	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAVGDALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGYC GHPSCSAGSE PTEILPAEVG 60 CSAAADGTMC SLVKKVMASQ VHVVGEGTVG RAAFTGNHQW IVHGAANGHG LSSSEVAAEM 120 NDQFKAGIQT IAIIPVLPRG VLQLGSTGLI RLWIESGQNL KCESVSASNS KGLDTASKTS 180 RKRSRPGESA KPRPKDRQLI QDRIKELREL VPNGAKCSID ALLEKTVKHM LFLQSVMKHA 240 DKLRHSTESK ANRDVTRMEI FLSLVRLLEP NCDGSGAAEN ANIINRPLGL VHQPVIPATG 300 RIQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827940.1	1e-83	transcription factor LHW-like
Refseq	XP_025877378.1	1e-83	transcription factor LHW isoform X2
TrEMBL	A0A2T7CK75	1e-82	A0A2T7CK75_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PKE5	1e-82	A0A3L6PKE5_PANMI; Transcription factor LHW-like
TrEMBL	I1QXV9	8e-86	I1QXV9_ORYGL; Uncharacterized protein
STRING	OPUNC11G03540.1	8e-83	(Oryza punctata)
STRING	ORGLA11G0035100.1	1e-86	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2654	32	42