PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05348.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 261aa    MW: 27259.7 Da    PI: 10.0576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05348.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45e-086388227
                                    -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                    kt+ C  +     Ck+G++C+FaHg+
  Zmw_sc05348.1.g00040.1.sm.mkhc 63 KTRMCTKYNTAEGCKFGEKCHFAHGE 88
                                    9***********************96 PP
2zf-CCCH40.74e-13228253127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     ykt+lC ++++ GtC +GdrC+FaHg+
  Zmw_sc05348.1.g00040.1.sm.mkhc 228 YKTKLCENYLK-GTCTFGDRCHFAHGE 253
                                     9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-135893IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-86192IPR000571Zinc finger, CCCH-type
SMARTSM003560.276188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.456189IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-46388IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.33E-14118196IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-14125196IPR004088K Homology domain, type 1
SMARTSM003221.0E-10126196IPR004087K Homology domain
PROSITE profilePS5008414.886127191IPR004088K Homology domain, type 1
PfamPF000135.7E-11129191IPR004088K Homology domain, type 1
SMARTSM003565.6E-9227253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-15227257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.873227254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-9227257IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEGAAAAARK RYRTDTVNGV GASVKRSRVA KMLNLDSPVV SAPTRVPVDH AAVTSSHPSS  60
TGKTRMCTKY NTAEGCKFGE KCHFAHGERE LGKPAYMSHE VGGRFGGWPE PRPQTTMGPP  120
AGNFGASATA KISVDASLAG GIIGKGGANT KHISRVTGVK LSIRDHESDA NLKNIELEGN  180
FDQIKQASDM VGELISTISA SMPAKHPSGP TAPAGRGGGG GPGGRGNYKT KLCENYLKGT  240
CTFGDRCHFA HGESEQRRGP A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-124zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-108C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLC5Y9Z91e-123C5Y9Z9_SORBI; Uncharacterized protein
STRINGSb06g032000.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]