PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05352.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 247aa MW: 27073.9 Da PI: 10.7855

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05352.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	187	229	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrR + + ++e Lr+l+P++ ++ + L A YI Lq Zmw_sc05352.1.g00010.1.am.mk 187 RRRDAAVTRRMEALRRLVPTS---DGDQDDELLLLSAAAGYIARLQ 229 778888999*********9...9999************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.2E-6	187	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-8	187	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDMKRINMIP PETTTTPKVL LRNCANSRVP NLRSNQTRRR DERARVDRAD CLPACLPAGD 60 DMPTHETWNI VVVVVVGVDT GCCDEEMNPK AWREGRAPSS HTHTRCNGLS PRLLVTISLQ 120 SATTIYKADS IVAMGAHTGR RRCSASSASM RARLPVASAV PSRRLPSSYR TTSTKASGGD 180 GKVRSSRRRD AAVTRRMEAL RRLVPTSDGD QDDELLLLSA AAGYIARLQA QVRVMQLMAN 240 VLEHAQG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26