PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05365.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 236aa MW: 25635.8 Da PI: 6.4195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05365.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.5e-10	89	137	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Zmw_sc05365.1.g00030.1.sm.mkhc 89 NNHSLAERLRRKKISERMKLLQDLVPGC----HKITGKAVMLDEIINYVQSLQ 137 58***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-16	84	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.60E-12	84	141	No hit	No description
PROSITE profile	PS50888	15.466	86	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-16	86	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-8	89	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	92	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MLGVGTALST SQVHSDARSS SSSESSIKFH GATVGDQLTE GSSPQERNSM EEGNKKISPK 60 LQSKEDSSDG DGTKDDYVHV RAKRGQATNN HSLAERLRRK KISERMKLLQ DLVPGCHKIT 120 GKAVMLDEII NYVQSLQRQV EMMLSQDRHI AFYGADPGSI SLVSQYNPGI VPPEMMCGVS 180 NPLDVLQGTI HNVSAVNQMP AMWEGLHMPH MNFNPGVAAD SGGTNDADRT MIIESS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001131789.1	1e-108	uncharacterized protein LOC100193160
Refseq	XP_008647764.1	1e-108	transcription factor bHLH62 isoform X1
Refseq	XP_008647791.1	1e-108	transcription factor bHLH62 isoform X1
Refseq	XP_020395971.1	1e-108	transcription factor bHLH62 isoform X1
Refseq	XP_020396007.1	1e-108	transcription factor bHLH62 isoform X1
TrEMBL	A0A1D6L304	1e-108	A0A1D6L304_MAIZE; Transcription factor bHLH62
STRING	GRMZM2G092091_P01	1e-108	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6033	36	50