PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05366.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 462aa    MW: 50147.1 Da    PI: 8.57
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05366.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-20129179155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++ a+ +++g
  Zmw_sc05366.1.g00030.1.am.mk 129 SRYRGVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEEAARAYDVAAVEFRG 179
                                   79********.**********7.....338***********************9998 PP
2AP256.66.6e-18325371555
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++ a+ +++g
  Zmw_sc05366.1.g00030.1.am.mk 325 GVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEEAARAYDVAAVEFRG 371
                                   9*****.**********7.....338***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-13129179IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23129188IPR016177DNA-binding domain
SMARTSM003802.5E-35130193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-31130188IPR001471AP2/ERF domain
PROSITE profilePS5103225.818130187IPR001471AP2/ERF domain
PRINTSPR003674.4E-11131142IPR001471AP2/ERF domain
CDDcd000185.83E-26134189No hitNo description
PRINTSPR003674.4E-11153169IPR001471AP2/ERF domain
SMARTSM003801.2E-31322385IPR001471AP2/ERF domain
PROSITE profilePS5103223.92322379IPR001471AP2/ERF domain
CDDcd000187.15E-27325381No hitNo description
SuperFamilySSF541713.92E-21325380IPR016177DNA-binding domain
PfamPF008473.1E-11325371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-29325380IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MPTDQARASS PPRPSMAPRL ERGGFMLPNT EQANSLLLRA LISVVSGDAA VPTLDELAET  60
KPQVAAAPPA ACARCGVEGC PGCELSAGDA TATIGSRSDS EDGESMSMSR VVVAGGVGKQ  120
GRRRGARGSR YRGVRRRPWG KWAAEIRDPH RAARKWLGTF DTAEEAARAY DVAAVEFRGQ  180
RAKLNFPADA AAVSAYSSWA TIQVPQQPVP QSLHEYCGLT AASPVHMAQA PAAQLWQQQG  240
GRPAAKDREE IWDGLDEILM LEDDSFWSIP PTYGPRLNGP SSTSQRRLGL SGREASSRLK  300
DRGVIISTSR SRNPSYRNPS GRDLGVRRRP WGKWAAEIRD PHRAARKWLG TFDTAEEAAR  360
AYDVAAVEFR GQRAKLNFPA DAAAVSAYSS WATVQVSQQP VPQSLHEYCG LTAASPVHMA  420
QAPAAQLWQQ QGGRPAAKDR EEIWDGLDEI LMLEDDSFWS IP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-21121381574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806850.18e-86ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2T7FCK71e-86A0A2T7FCK7_9POAL; Uncharacterized protein
STRINGSi018144m4e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124