PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05409.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 534aa    MW: 58260.5 Da    PI: 7.0726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05409.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16210257148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg W++eEde+l++++  +G g+W+ ++++ g+ R++k+c++rw +yl
  Zmw_sc05409.1.g00030.1.am.mk 210 RGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 257
                                   788*******************************************97 PP
2Myb_DNA-binding53.45.9e-17263307147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr+++eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
  Zmw_sc05409.1.g00030.1.am.mk 263 RGRFSAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 307
                                   89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.944205257IPR017930Myb domain
SuperFamilySSF466892.06E-29208304IPR009057Homeodomain-like
SMARTSM007176.5E-13209259IPR001005SANT/Myb domain
PfamPF002492.0E-15210257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-24211264IPR009057Homeodomain-like
CDDcd001675.78E-12213257No hitNo description
PROSITE profilePS5129425.49258312IPR017930Myb domain
SMARTSM007174.4E-17262310IPR001005SANT/Myb domain
PfamPF002491.5E-15263307IPR001005SANT/Myb domain
CDDcd001671.16E-12265308No hitNo description
Gene3DG3DSA:1.10.10.601.7E-24265312IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MRTYCHCPGD NETDELKACG ARNRALQLVP PENPDMRCSF LKLRANHVPI SALTKRQGAG  60
KFGNYAASVR WLPSIRVTAE LTCTVSVKQP RDLCDRSRTD GDGGVVRATA AASSEVHDRG  120
PGKRGERGPG GCFSPGPVPC GDRAETVRDG SPAGTFTEVV SSDQRISHLS SYDLIRVHSE  180
VPIVHVLFFL RSYRWACVGG HALLCQKVKR GLWSPEEDEK LIRYISTHGY GCWSEVPEKA  240
GLQRCGKSCR LRWINYLRPD IRRGRFSAEE EKLIISLHAI VGNRWAHIAS HLPGRTDNEI  300
KNYWNSWIKK KIRKPASTTS SSSVSPPCST VTAASDAAHG HLQTLPFSVA DNQLDAMIIN  360
QSLALPSSTK LAVAGQDSPP TAPLPPQHCP FFMFDTSVSP PSSLSPPTAA QLQHPFLTFT  420
TAAVDVPSYQ LPPLVDGMSM NMSALGCSSL GDHERGHDHD GNNGQAGPGM SSNGGCCGYE  480
QQEQQQQLGH DQWDDESAQH LLMWDDDQEL TPSNLEVMQT GAHSLLFMGP NDHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-272103127108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822193.11e-153myb-related protein 308
TrEMBLA0A2T7D3G11e-164A0A2T7D3G1_9POAL; Uncharacterized protein
STRINGPavir.Fb00364.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757