PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05409.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 138aa MW: 14950 Da PI: 10.7856

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05409.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	100	122	3	25
SS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWk 25 +WT+eE+ ++ + ++lG+g+W+ Zmw_sc05409.1.g00040.1.am.mkhc 100 PWTKEEHRAFLAGLEKLGKGDWR 122 8*********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-6	94	123	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-6	99	123	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-5	100	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MSRAPPARMP RDLRPGVMRL FGVTITPPLE VDPSDRDPSP KPPLAAREDV MRKCKSMGNL 60 AAAAAPVDGS GTGDGYHSDD GLMQSSNKRR RAQGRKKSVP WTKEEHRAFL AGLEKLGKGD 120 WRGAMENSVS IQTNSKGP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008676506.1	2e-50	putative MYB DNA-binding domain superfamily protein isoform X1
TrEMBL	C4J012	5e-49	C4J012_MAIZE; MYB-related transcription factor
STRING	GRMZM2G157306_P02	7e-49	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5858	36	52