PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05410.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 531aa    MW: 56863 Da    PI: 7.1353
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05410.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-12247303155
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zmw_sc05410.1.g00060.1.sm.mkhc 247 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 303
                                     789******************333.44555535555.779999**************98 PP
2AP246.41e-14348397355
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zmw_sc05410.1.g00060.1.sm.mkhc 348 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 397
                                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-14247313IPR016177DNA-binding domain
CDDcd000183.92E-17247313No hitNo description
SMARTSM003809.1E-23248317IPR001471AP2/ERF domain
PfamPF008471.1E-8248303IPR001471AP2/ERF domain
PROSITE profilePS5103216.963248311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-12248312IPR001471AP2/ERF domain
PRINTSPR003679.0E-6249260IPR001471AP2/ERF domain
CDDcd000182.42E-23346407No hitNo description
SuperFamilySSF541719.15E-18346407IPR016177DNA-binding domain
PROSITE profilePS5103219.203347405IPR001471AP2/ERF domain
SMARTSM003802.9E-33347411IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18347405IPR001471AP2/ERF domain
PfamPF008471.4E-9348397IPR001471AP2/ERF domain
PRINTSPR003679.0E-6387407IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSAAGGY GDSAGCGGRA SGDHGEGSCM SPAAVSPLVA MPLQSDGSLP  60
YASPGWRHAE AEGPKLEDFM SVTCSNKSGS IHDSSQADHA KYHEVHDLQP LSGSYYYHGH  120
GSGGSSGIDL EINVNAPPMS GHPDHNVLAP QDHHHHFLPH HGQSFLGTPA NPAGPPFGAM  180
PMYNAAPGIG SSMSISGIKS WLREAMYVPE RSSALSLSVA DVPGEPLPAP MPVAARRPAQ  240
TFGQRTSQFR GVTRHRWTGR YEAHLWDNTC RKEGQTRKGR QGGYDKEEKA ARAYDLAALK  300
YWGPSTHINF PLSTYEKEME EMKNMSRQEF IAHLRRNSSG FSRGASMYRG VTRHHQHGRW  360
QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDISKYD VKRICASTHL  420
MGGDAACRRS SPTRPLDGPP ELAVVGADGG TDRSDAPGGD VQSASDNSEN SEGHRGAHLM  480
HGLQYAPAMK FEAGEGSGGG NWMTAAAAAA ARPVGGVTTV HQLPVFTLWN D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6SCK60.0A0A3L6SCK6_PANMI; Uncharacterized protein
STRINGSi035073m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151