PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05466.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 733aa    MW: 79432.7 Da    PI: 9.773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05466.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.99.4e-15660685126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ + +tG C+yGdrC+FaHg
  Zmw_sc05466.1.g00030.1.am.mk 660 FKTELCNKWEETGACSYGDRCQFAHG 685
                                   79***********************8 PP
2zf-CCCH19.41.9e-06698723126
                                   --S---SGGGGTS.--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                                   ykte Cr  ++ G +C+yG rC+F H+
  Zmw_sc05466.1.g00030.1.am.mk 698 YKTEVCRMVHA-GvICPYGHRCHFRHS 723
                                   9**********.66**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.188247277IPR002885Pentatricopeptide repeat
PfamPF015350.0053251276IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.249278312IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.8E-5281308IPR002885Pentatricopeptide repeat
PfamPF015352.3E-6281308IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.1000.103.9E-18654692IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10656691IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488659687IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-9659686IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-12660685IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-11693723IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7694724IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.596697725IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013697724IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MLRHRLGLAS CQDCGLPHGR GHGWARSLPG RTGWARCLLR SRSPSLALLI HSRERSKRPR  60
APQLSSSSLK PLQNPARLLL RLRLRLPPPC APPPPPPAEM PPPPPTNSAL NPPHLLSSIA  120
TPRSRAPSLN LGHPSDKWPR RLSSTAPLAA VSSAAFASSA DPSASLRALC SHGQLSEALW  180
LLESSAEPPD EDAYVALFRL CEWRRADEVQ PNLMTITSVT VASGMLSDIG FAKEVHGLAV  240
KKGFATDVAF CNSLIQMYAS LGMMGQAKAV FSRMDTKDTM SWTAMISGYE KSGLPDKALE  300
VYALMEVNNA RILPRAARRS AADALGFGLN NTSTSYSTES ALIRLRPMNT CPPASPHHSS  360
SVPLHLPPLR SPVSSVVPLL QSTPNYEVSK LFAERQGSRA MMEALLPGTA QHDGLHSAFG  420
PRPFVPGGGR FPSSPNLLTY GGDLFCGGYS TDPFGRGPER SASTSPRAAS RSRFSPDTGS  480
VVDEEDDSPA AAEHRARLAR LALQYQEAAS RYQLCLSHLA DTNDEAAALR RENDQLRCAN  540
NDLVRRIDIV GGKHSSALAL ADEFRRLTLA EEQAKTIPPP PPPAAAMRPV PVVTPKSISV  600
RSTGYVKMTP SGKHRASKTK NAGSQRVFVG MDGAAKGEEK GVKEQCTGGV EFEVYNQGMF  660
KTELCNKWEE TGACSYGDRC QFAHGIAELR PVIRHPRYKT EVCRMVHAGV ICPYGHRCHF  720
RHSITPADRI LRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-23660723467Butyrate response factor 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784