PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05516.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 244aa    MW: 26891.2 Da    PI: 9.0747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05516.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-1594138347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+ +++d+ k lG+g+W+ I++ + ++Rt+ q+ s+ qky
  Zmw_sc05516.1.g00030.1.sm.mkhc  94 PWTEEEHRKFLDGLKHLGKGDWRGISKNFVTTRTATQVASHAQKY 138
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.14287143IPR017930Myb domain
SuperFamilySSF466896.6E-1889143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1891142IPR006447Myb domain, plants
SMARTSM007177.5E-1191141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1193137IPR009057Homeodomain-like
PfamPF002491.5E-1294138IPR001005SANT/Myb domain
CDDcd001673.47E-1094139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MERRGPDEGR TQALPPVSFR LFGTDVRLPG EEADEEAGPV EMKKCSSMPN LTYNRLLPTG  60
EAGKGYASDD GDLATPQQKR RRRKAQERKK GGVPWTEEEH RKFLDGLKHL GKGDWRGISK  120
NFVTTRTATQ VASHAQKYFL RQTNPGKKKR RASLFDVGIT DYNNDQVLGS ENIDNKPAPT  180
EEIIHTDRGD VPRPKAHAES SFASMACGLE PASSISSLEL SIAVNSLDLS IEPPRGAAEP  240
IKVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883KRRRRK
27889KRRRRKAQERKK
37989RRRRKAQERKK
4146150KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983632.11e-101transcription factor MYBS2
SwissprotB8BI932e-68MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC512e-68MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A0A9KKT01e-112A0A0A9KKT0_ARUDO; Uncharacterized protein
STRINGSi036966m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]