PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05528.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 118aa    MW: 13545.5 Da    PI: 10.2901
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05528.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.79.6e-261055247
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                                    rien+  rqvtfskRr g++KKAeEL vLCda+va+i+fs tgkl 
  Zmw_sc05528.1.g00030.1.sm.mkhc 10 RIENTAARQVTFSKRRRGLFKKAEELAVLCDADVALIVFSATGKLS 55
                                    8*******************************************95 PP
2K-box15.19.5e-07841137099
                           K-box  70 nellleqieelqkkekelqeenkaLrkkle 99 
                                     ++ll++qi+elq++  +l++en +L+++++
  Zmw_sc05528.1.g00030.1.sm.mkhc  84 DQLLMQQISELQQRGIQLEDENARLKSQVA 113
                                     69************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.408154IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-26168IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-22323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MARERREIRR IENTAARQVT FSKRRRGLFK KAEELAVLCD ADVALIVFSA TGKLSHMNEI  60
IDKYSTHSKN LGKSHQKPSL DLNDQLLMQQ ISELQQRGIQ LEDENARLKS QVALEVKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15168173MEF2C
5f28_B2e-15168173MEF2C
5f28_C2e-15168173MEF2C
5f28_D2e-15168173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964865.12e-47MADS-box transcription factor 55
SwissprotQ9XJ664e-45MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A368QS864e-46A0A368QS86_SETIT; Uncharacterized protein
STRINGPavir.Da01333.1.p9e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3276734
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]