PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05549.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 184aa    MW: 19532.9 Da    PI: 7.3881
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05549.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.41e-32221241100
                        DUF260   1 aCaaCkvlrrkCakd..CvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavg 78 
                                   +CaaC++lrr+C +   Cvlapyfpa++p+++a vh +FG+sn ++l++   p eer +a+++++ eA++r+rdPvyG++g
  Zmw_sc05549.1.g00030.1.am.mk  22 RCAACRYLRRRCDPAggCVLAPYFPASRPRRYADVHAVFGTSNATRLIQVSlPVEERARAADTMAAEAQWRVRDPVYGSAG 102
                                   6***********99777*******************************96538899************************* PP

                        DUF260  79 vilklqqqleqlkaelallkee 100
                                   +i +lqq+++ ++ ela++++e
  Zmw_sc05549.1.g00030.1.am.mk 103 IIDRLQQEIRAVQRELATTRAE 124
                                   *****************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4221125IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3222122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSSSAGNTEL ELGSGGSSGS GRCAACRYLR RRCDPAGGCV LAPYFPASRP RRYADVHAVF  60
GTSNATRLIQ VSLPVEERAR AADTMAAEAQ WRVRDPVYGS AGIIDRLQQE IRAVQRELAT  120
TRAELAMRAG TVAARTAGAQ RAPATTPPQP PAVEVRDGGH PLAVQHGEEA PVLDPDVFLN  180
LDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-302312512111LOB family transfactor Ramosa2.1
5ly0_B1e-302312512111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683529.11e-58LOB domain-containing protein 24
TrEMBLK3YMP01e-56K3YMP0_SETIT; Uncharacterized protein
STRINGPavir.Cb01140.1.p5e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562