PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05604.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 565aa MW: 61467.4 Da PI: 6.6167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05604.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	406	425	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Zmw_sc05604.1.g00100.1.am.mk 406 FPCPVCFKTFNRYNNMQMHM 425 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57850	4.48E-17	10	62	No hit	No description
Gene3D	G3DSA:3.30.40.10	3.3E-17	11	59	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF13639	1.9E-13	12	56	IPR001841	Zinc finger, RING-type
CDD	cd00162	2.16E-10	13	56	No hit	No description
PROSITE profile	PS50089	12.77	14	56	IPR001841	Zinc finger, RING-type
SMART	SM00184	3.5E-7	14	55	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50157	9.494	406	433	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.3E-6	406	425	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	408	428	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.97E-6	472	510	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-5	477	510	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.538	490	510	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
RATYRRRGGG DPECAFCLSA VQDGDEVREL RCGHVFHRAC LDAWLVRPRA TCPLCRDRLL 60 PADPPRACAA ADDDDGLEAY FVDQDHDLAP SSPASAYHPF DRTNDGAVTA AGLAARSSSS 120 IPIPKPLANA SQSQRTHALY NNPASPTTSP AHWSGVEALK LLLPQTQRAQ AQQLHAMENP 180 YTSFFQNHHR RYYYHPATQP GQPAPAPAPP AAAYSLQFFP TPPTTVPTAA PYSPPSPPLR 240 EALPLLSLAP ASRDEDRRGS RRTEADSDED DGEEEAGPTS ISNQGQQRVG GLFTDLNAKA 300 ASDPMDVESG AGSAAGDVTV ALRIGLPTTS AGLGLDLDDV VEEVEDNDGN CEGRNDRENG 360 ASREGEEEAA AAPLGLGFPS TPIGRLNKGQ YWIPTPSQIL IGPTQFPCPV CFKTFNRYNN 420 MQMHMWGHGS QYRKGPESLR GIQPTAMLRL PCYCCAPGCR NNIDHPRAKP LKDFRTLQTH 480 YQRRHGLKPF LCRRCGKAFA VKGDWRTHEK NCGRLWYCLC GSEFKHKRSL KDHARAFGHG 540 HVAVGGGGID EDDDGAVSDV EQHVD

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

RATYRRRGGG DPECAFCLSA VQDGDEVREL RCGHVFHRAC LDAWLVRPRA TCPLCRDRLL  60
PADPPRACAA ADDDDGLEAY FVDQDHDLAP SSPASAYHPF DRTNDGAVTA AGLAARSSSS  120
IPIPKPLANA SQSQRTHALY NNPASPTTSP AHWSGVEALK LLLPQTQRAQ AQQLHAMENP  180
YTSFFQNHHR RYYYHPATQP GQPAPAPAPP AAAYSLQFFP TPPTTVPTAA PYSPPSPPLR  240
EALPLLSLAP ASRDEDRRGS RRTEADSDED DGEEEAGPTS ISNQGQQRVG GLFTDLNAKA  300
ASDPMDVESG AGSAAGDVTV ALRIGLPTTS AGLGLDLDDV VEEVEDNDGN CEGRNDRENG  360
ASREGEEEAA AAPLGLGFPS TPIGRLNKGQ YWIPTPSQIL IGPTQFPCPV CFKTFNRYNN  420
MQMHMWGHGS QYRKGPESLR GIQPTAMLRL PCYCCAPGCR NNIDHPRAKP LKDFRTLQTH  480
YQRRHGLKPF LCRRCGKAFA VKGDWRTHEK NCGRLWYCLC GSEFKHKRSL KDHARAFGHG  540
HVAVGGGGID EDDDGAVSDV EQHVD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957169.1	1e-154	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-119	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A3B6LP54	1e-154	A0A3B6LP54_WHEAT; Uncharacterized protein
TrEMBL	A0A446UDH7	1e-154	A0A446UDH7_TRITD; Uncharacterized protein
STRING	Traes_5BL_6888AE9CB.1	1e-155	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]